PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045454.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 439aa    MW: 49516.5 Da    PI: 7.91
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045454.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.5e-40140216278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           C v+gC+adls+++eyh+rh+vCe hsk+p v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  HL.SW.v1.0.G045454.1 140 CLVDGCRADLSNCREYHKRHRVCERHSKTPIVVVKGEEKRFCQQCSRFHSLGEFDEIKRSCRKRLDGHNRRRRKSQP 216
                           **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-32133201IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.308137214IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-37139219IPR004333Transcription factor, SBP-box
PfamPF031101.6E-29140213IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MYIYIPYCLS MNWFLYMCRK GGDRIEEIYG ALMDWDFREF GWEESTELDP KEDDDDDLVF  60
DFISSGRTTT QKSSSSSTTT TTTTAPSSEG LKLGSTTTMT DPTEQQSLKR PNQVLGDSNL  120
ASSPSGSSKR LNGGAQKLSC LVDGCRADLS NCREYHKRHR VCERHSKTPI VVVKGEEKRF  180
CQQCSRFHSL GEFDEIKRSC RKRLDGHNRR RRKSQPEPLY FSSKGFLSGY KGPRILHFGS  240
PQIYAATSVK SLWPMDTKTG GQESWIYSPP LPHKRFQVNQ QSPSPTPFNG GDKRVFFLQK  300
NHPKQGNQTY PEAILCHPSE PPGKGREKSH ILSSEEISLP IDSGGRALYL LSTNPTQLSG  360
VNQMGQHNES FPYPFQLLDH NDGKDKPLDH HHHHCHHHLP AYDVNKSNIY GNMMLRMGPE  420
DCLENGAAAL QMLPISLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-261402131184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112387.21e-146squamosa promoter-binding-like protein 9
TrEMBLA0A2P5FC860.0A0A2P5FC86_TREOI; SBP-box transcription factor
STRINGXP_010112387.11e-141(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-44SBP family protein