PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045844.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 214aa    MW: 24481.8 Da    PI: 8.8674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045844.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-101552104299
                           TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                             ++W+v l  +++s  + +++GW +F  +n +++gD +vF+l+ ++   l+v++++k
  HL.SW.v1.0.G045844.1 155 GTQQWTVSLLLCNSS--FNFSEGWVKFLGDNSICSGDACVFELMTKNPVVLKVSIIKK 210
                           4599*****667766..889**********************9987777788888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.501166IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-9273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-92475IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-10129211IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-10149211IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.306157211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
ELSRKFVRLH GETLANPIGL VAKHGKLYLE EGWPEFVKYY QLAHGYMLIF VYEGRSNFNV  60
IICDKTSYEI DYTSFSSQNF SSEESDSENE GMSKKCEAGN HTSRKMNHKN NQGTYKTYRG  120
TKEASNFTSN YPLFFIIVRT DRYRRYKLSV TLKVGTQQWT VSLLLCNSSF NFSEGWVKFL  180
GDNSICSGDA CVFELMTKNP VVLKVSIIKK NVD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-09B3 family protein