PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045845.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 131aa    MW: 15359.4 Da    PI: 6.7836
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045845.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.7e-1220103999
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           +v+ ++   lp+kf++  g+       ++l  + + +W++ l    k g+ +l++GW eFvk  +L  g +++F ++grs+f  +v ++
  HL.SW.v1.0.G045845.1  20 YVTFEN-QQLPRKFVRLQGET--LANPVSLVLPCSHKWKIGL--VAKHGKLYLEEGWPEFVKYYQLAHGYMLIFVYEGRSNF--NVIIC 101
                           555555.579*****777655..55569999999********..999999****************************9999..99999 PP

                           -S CS
                    B3  98 rk 99 
                           +k
  HL.SW.v1.0.G045845.1 102 DK 103
                           97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.001716104IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1520104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-1520104IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-926103IPR003340B3 DNA binding domain
PROSITE profilePS5086310.75728104IPR003340B3 DNA binding domain
CDDcd100175.79E-1128102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MELIPLIQRR DQPKKQWQQY VTFENQQLPR KFVRLQGETL ANPVSLVLPC SHKWKIGLVA  60
KHGKLYLEEG WPEFVKYYQL AHGYMLIFVY EGRSNFNVII CDKTSYEIDY TSFSSQNFSS  120
EESDSENEGR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681213.11e-24PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2P5BQR59e-27A0A2P5BQR5_PARAD; B3 DNA binding domain containing protein
STRINGXP_010681213.15e-24(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-17B3 family protein