PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045885.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 427aa    MW: 47580.2 Da    PI: 4.3212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045885.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-194796255
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  HL.SW.v1.0.G045885.1 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96
                          789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.41E-3246103No hitNo description
Gene3DG3DSA:3.30.730.102.3E-2747103IPR001471AP2/ERF domain
PROSITE profilePS5103219.55947104IPR001471AP2/ERF domain
PfamPF008471.1E-134796IPR001471AP2/ERF domain
SMARTSM003801.6E-3547110IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-1947104IPR016177DNA-binding domain
PRINTSPR003676.4E-84859IPR001471AP2/ERF domain
PRINTSPR003676.4E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MARKRKATTS EGVEDKSSSE ETMAWDEMVK EATAAAALGG ARRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSSSS SSSPALPSKI  120
TNLLLQRLKA RNNTTNINKN TPVSSSFVPI INNHQQQNHQ IDACHEEPID FSDAQFTDFL  180
TDPEDYTASN LTDMTNNSIS SATIDYMTSS FESCLTDQRE DCREREHDEG LDYNLSDGSG  240
QTSSGEYGHS RVEGEEDGEE QGTGYHELSA MDFQFVDDVD QSTCNYSPFE ITGEIEESME  300
EAAETFLDEP SMLREAMKRM KYERKFSASL YAFNGIPECL RIKIGAGNMN GRVMSESDQL  360
RNLKIACNTN KEEMAKEEHV QLMEKKEEGE PEISNDSGSS SSDISDDGEL MSLWSSLDLP  420
PICFVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12471031471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089558.11e-172putative uncharacterized protein DDB_G0281733
TrEMBLA0A2P5FEY01e-180A0A2P5FEY0_TREOI; AP2/ERF transcription factor
STRINGXP_010089558.11e-172(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11