PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G046063.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 242aa    MW: 26162.2 Da    PI: 4.6827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G046063.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-174292155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a ++++g
  HL.SW.v1.0.G046063.1 42 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVATLAIKG 92
                          68*****998.**********843...6*******************99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-124292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-3143101IPR001471AP2/ERF domain
SMARTSM003802.5E-3443106IPR001471AP2/ERF domain
PROSITE profilePS5103222.53743100IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2143101IPR016177DNA-binding domain
PRINTSPR003672.1E-104455IPR001471AP2/ERF domain
CDDcd000183.55E-3144102No hitNo description
PRINTSPR003672.1E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLHTQSKKIK KKLIKQETSS SSSGSSSGRV RARESGDCSK HPVYRGVRMR SWGKWVSEIR  60
EPRKKSRIWL GTFSTPEMAA RAHDVATLAI KGNSAFLNFP ALHDSLPRPA SLAPRDIQAA  120
AAEAAAMVAL ELNPAATTTS TSTSSSSNDS ESDELGEIVE LPNIEGITTS NTTTFDSPES  180
VGEFMMFSDS VDDCWAFEYP PLGLELPLQG NEFYGEFSDQ ILAAESLIPS DAIEGLVLWT  240
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1736100772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098118.16e-76ethylene-responsive transcription factor TINY
SwissprotQ9LYD33e-54DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2P5ESQ73e-84A0A2P5ESQ7_TREOI; AP2/ERF domain containing protein
STRINGXP_010098118.12e-75(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]