PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G046357.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 259aa    MW: 28351.1 Da    PI: 6.1196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G046357.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-1867116255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  HL.SW.v1.0.G046357.1  67 SFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVAALTIKG 116
                           69****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1167116IPR001471AP2/ERF domain
PROSITE profilePS5103223.23567124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3267125IPR001471AP2/ERF domain
SMARTSM003802.5E-3967130IPR001471AP2/ERF domain
CDDcd000184.99E-3468126No hitNo description
SuperFamilySSF541714.71E-2168125IPR016177DNA-binding domain
PRINTSPR003673.5E-106879IPR001471AP2/ERF domain
PRINTSPR003673.5E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKEQMVNQEW DFSASSSSSL EQPMTHKKNS KLKTTTTSDH HLHNHGHSKA KTTSSNSHNG  60
ETQKTTSFRG VRMRQWGKWV SEIREPKKKS RIWLGTFPTA EMAARAHDVA ALTIKGRSAH  120
LNFPELAPAL PRPASSSPKD IQAAAAKAAA YCTSNFSTTT STSEDGDEDH QTSSSPDSTT  180
TAETSSFIST SPLIADNGDG DDTFFDLPDL LLDVCKQKNG DFCAYYSSWP LDEAADNHAA  240
LIGCSRLIDE DYSLPWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-16681241572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001450.12e-55PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9ZQP35e-49ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A2P5FIT25e-84A0A2P5FIT2_TREOI; AP2/ERF domain containing protein
STRINGPOPTR_0001s15550.11e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]