PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G046684.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 323aa    MW: 36551.6 Da    PI: 6.9621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G046684.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151562148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
  HL.SW.v1.0.G046684.1 15 KGLWSPEEDLRLQNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                          678*******************************************97 PP
2Myb_DNA-binding53.94e-1768113148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg +++ E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
  HL.SW.v1.0.G046684.1  68 RGTFSKHEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                           899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1391062IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-211065IPR009057Homeodomain-like
SuperFamilySSF466891.1E-2812109IPR009057Homeodomain-like
SMARTSM007172.5E-101464IPR001005SANT/Myb domain
PfamPF002497.9E-141562IPR001005SANT/Myb domain
CDDcd001673.73E-91862No hitNo description
PROSITE profilePS5129425.19863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2566117IPR009057Homeodomain-like
SMARTSM007172.8E-1667115IPR001005SANT/Myb domain
PfamPF002491.1E-1568113IPR001005SANT/Myb domain
CDDcd001671.75E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGCKSQDKPR PKHRKGLWSP EEDLRLQNYV LKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGT FSKHEEETIL TLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKRVAKA  120
EEEMLTEQTK TQCTTSSSES SPSSDKNSNR IPSYESLDQM VEKSLLHNDQ SVFNPNLYSD  180
FSKDHHHQQQ PKISSLPKLL FAEWLSIDQV NNNNININNH NGPNSANMVQ PMVPRESFGH  240
SLSFQDGMGH GILLNEGIFG GDHFSNGLSQ VSDSDLLHSE FKFEDQISGS GFGHDLISGI  300
SDDVCINIHD FSMHSDALYS FN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-22151174105C-Myb DNA-Binding Domain
1msf_C2e-22151174105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878037.11e-134transcription factor LAF1-like
RefseqXP_015878099.11e-134transcription factor LAF1-like
SwissprotQ9M0K44e-57LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A2P5CZD71e-170A0A2P5CZD7_TREOI; MYB transcription factor
STRINGXP_010107436.11e-127(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.16e-61myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]