PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han000382
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 252aa    MW: 27854.9 Da    PI: 5.1908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32084967PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-24978PU_refplantGDBView CDS
PUT-169a-Helianthus_annuus-24979PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-2072121255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa+a++a +++++g
  Han000382  72 QFRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAARAYDAEARRIRG 121
                69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-3272130IPR001471AP2/ERF domain
SMARTSM003805.3E-3972135IPR001471AP2/ERF domain
CDDcd000181.80E-3272129No hitNo description
SuperFamilySSF541714.32E-2272130IPR016177DNA-binding domain
PROSITE profilePS5103223.47272129IPR001471AP2/ERF domain
PRINTSPR003671.9E-117384IPR001471AP2/ERF domain
PfamPF008474.2E-1273121IPR001471AP2/ERF domain
PRINTSPR003671.9E-1195111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MCGGAILSDI IAPSANRSRP LTADNSPSDF FDDFEADFLG FKNNMPYAFS PSKNFAPGSD  60
EKSAGSKKRK NQFRGIRQRP WGKWAAEIRD PSKGVRVWLG TFNTAEEAAR AYDAEARRIR  120
GPKAKVNFPT PAKPKNHKST SAAAAAAYGF FVEDKPKPQP SESDALYISS DQGGSCNSFE  180
FPWGENCANP TKKPKTESVN LVSNCDNDLF FEMPYLEGNW DAAFLTGEDL NQQDGAANVM  240
DLWSFDDLQF FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2072129563ATERF1
3gcc_A1e-2072129563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.41760.0embryo| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021984572.10.0ethylene-responsive transcription factor RAP2-12-like
SwissprotQ6K7E61e-36ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A251U3V90.0A0A251U3V9_HELAN; Putative integrase-type DNA-binding superfamily protein
STRINGMigut.I01124.1.p5e-63(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-35related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]