PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han000411
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB
Protein Properties Length: 233aa    MW: 25853.8 Da    PI: 5.8223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48326942PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-31384PU_unrefplantGDBView CDS
PUT-169a-Helianthus_annuus-31385PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.5e-09955245
                     SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                      rWT e d  + da   + ++    +W++Ia  +  g++ +++k+++ 
        Han000411  9 SRWTREQDRAFEDALVAYYKEdsedCWEKIATDVA-GKSVEEVKHHYE 55
                     59*****************99**************.**********96 PP
2Myb_DNA-binding43.57.4e-14115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
        Han000411 115 AWSEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 159
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.414662IPR017884SANT domain
SMARTSM007178.1E-7760IPR001005SANT/Myb domain
CDDcd001672.27E-71058No hitNo description
PfamPF002491.6E-51055IPR001005SANT/Myb domain
SuperFamilySSF466893.87E-91165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-51158IPR009057Homeodomain-like
PROSITE profilePS5129417.825108164IPR017930Myb domain
SuperFamilySSF466892.24E-16110165IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-17112162IPR006447Myb domain, plants
SMARTSM007171.0E-11112162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-11113158IPR009057Homeodomain-like
CDDcd001672.55E-10115160No hitNo description
PfamPF002496.6E-12115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MADEVVGDSR WTREQDRAFE DALVAYYKED SEDCWEKIAT DVAGKSVEEV KHHYELLVDD  60
LDRIESGIVP LPSYSTSSDD SASHGGDDGT SKKGGESVHG GKSSKADQER RKGVAWSEDE  120
HRLFLLGLEK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSMNRDR RRSSIHDITS  180
VXHGDTSAPQ AAITGXTSTS PAGISLVDDX KRCCFYIVLK AACAHLRLES CDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1511771176RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022020689.11e-143transcription factor SRM1-like isoform X1
RefseqXP_022020690.11e-143transcription factor SRM1-like isoform X2
SwissprotQ9FNN69e-91SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A251RM541e-142A0A251RM54_HELAN; Putative homeodomain-like transcriptional regulator
STRINGXP_006484484.11e-103(Citrus sinensis)
STRINGXP_006437648.11e-103(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-87MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]