PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han000593
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family GRAS
Protein Properties Length: 528aa    MW: 57564.8 Da    PI: 5.7439
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S37958926PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-19493PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.93e-1331555231374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAea ++ d++la++l++r   la++++ +m+++a yfteALa r+++        l+p++ +  ++s +   ++ f+e++P+lkf+h+taNq
  Han000593 155 LVHTLMACAEAGTKPDQKLAETLVSRAGMLAASQAGAMRKVALYFTEALACRIYK--------LNPKSPPI-HQSFNNILQSHFYEACPYLKFAHFTANQ 245
                689****************************************************........66666653.34444455678***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aIlea++g+++vH+iDf+i+qG+QWpaLlqaLa Rp+gpp++R+Tgvg+p ++  + + l+e+g +La++A++++v+fe++ ++a++l+d+e+ +L+++ 
  Han000593 246 AILEAFSGKSKVHVIDFSIKQGMQWPALLQALALRPGGPPKFRLTGVGPPVNNnnNIDYLQEVGCNLAQLADTIHVEFEYSRVIAESLADIEPGMLDLRD 345
                *************************************************999888999****************************************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.....lpreseerikvErellgre 293
                +E++aVn+v+++h+ll++ +s+e+    vL ++k l+P +v+vveqea+hn++ Flerf+e+l+yys+lfdsle++      + +see++ +++++lg++
  Han000593 346 DEVVAVNSVFEMHQLLARAGSVEK----VLTALKVLNPVIVTVVEQEANHNGPVFLERFTESLHYYSTLFDSLESGvfdslESGASEEDKAMSEVYLGKQ 441
                ******************999999....*********************************************99844432233459************* PP

       GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                i+nvvacega+r+erh tl +W++ +++aGF++v+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Han000593 442 ICNVVACEGADRVERHMTLTQWKSLFDSAGFESVHLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLITTSAWR 523
                *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.322129502IPR005202Transcription factor GRAS
PfamPF035141.0E-130155523IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
XLSSWLESMI SELNPILQPP LTINNPFSND IVQAQPPAAV INNNSFLNDA VPVQVQVQPP  60
VVNNSFVNDV VVHIDDLQAI PGNAIYPPPP AKKLKTSSPS SSGGASFSST GASISGGACT  120
SFNRNQNQNQ SSNNNQNRTQ NQIVVVDSQE NGIRLVHTLM ACAEAGTKPD QKLAETLVSR  180
AGMLAASQAG AMRKVALYFT EALACRIYKL NPKSPPIHQS FNNILQSHFY EACPYLKFAH  240
FTANQAILEA FSGKSKVHVI DFSIKQGMQW PALLQALALR PGGPPKFRLT GVGPPVNNNN  300
NIDYLQEVGC NLAQLADTIH VEFEYSRVIA ESLADIEPGM LDLRDDEVVA VNSVFEMHQL  360
LARAGSVEKV LTALKVLNPV IVTVVEQEAN HNGPVFLERF TESLHYYSTL FDSLESGVFD  420
SLESGASEED KAMSEVYLGK QICNVVACEG ADRVERHMTL TQWKSLFDSA GFESVHLGSN  480
AYKQASMLLA LFAGGDGYRV EENNGCLMLG WHTRPLITTS AWRSRSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-681405264382Protein SCARECROW
5b3h_A3e-6815052613381Protein SCARECROW
5b3h_D3e-6815052613381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021976370.10.0DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A251U2320.0A0A251U232_HELAN; Putative GRAS family transcription factor family protein
STRINGPOPTR_0008s13090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein