PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han000957
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C2H2
Protein Properties Length: 366aa    MW: 41057.4 Da    PI: 8.6989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-60272PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05628123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Han000957  6 FVCEICSKGFQRDQNLQLHRRGH 28
               89*******************88 PP
2zf-C2H210.80.001583105123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC+ C+k +  +s+ k H + +
  Han000957  83 WKCERCSKKYAVQSDWKAHSKIC 105
                58*****************9876 PP
3zf-C2H2110.0013113131523
                TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                dCg+ Fsrk+++ +H   +
  Han000957 113 DCGTIFSRKDSFITHRAFC 131
                9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.1E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-7528No hitNo description
PROSITE profilePS5015710.887628IPR007087Zinc finger, C2H2
SMARTSM003550.036628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-470104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-778103No hitNo description
SMARTSM0035523083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLKQRNKD EVVRKKVYIC PEKSCVHHDP  60
SRALGDLTGV KKHFSRKHGE KKWKCERCSK KYAVQSDWKA HSKICGTREY KCDCGTIFSR  120
KDSFITHRAF CDPIAQENSR MASFAMVHNP TTTNLNYQND LVTMMNNNGR NMNPGMKPML  180
NMAAPQDNNP IENSTIISSL LGSSSSNNNN GGILSYEAMQ WLSRSQEPTE NITELPLGFY  240
LKEEEDSNNK VEYFQPNPLY NNYGGCPPLP PHISATGVLQ KASEMGPTRS TNSGGFSGMM  300
NGDGMTMATM AGLAQKSGRV DSCEGNLTRD FLGVEGNERR AFSMQQEIMK FTCPMSDSNI  360
GFSGNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3579145369Zinc finger protein JACKDAW
5b3h_F1e-3579145369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13445KQRNKDEVVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.26681e-103embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021993337.10.0protein indeterminate-domain 9-like
TrEMBLA0A251TCX30.0A0A251TCX3_HELAN; Putative zinc finger C2H2-type/integrase DNA-binding domain-containing protein
STRINGXP_009620251.11e-110(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.16e-96C2H2-like zinc finger protein