PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001101
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HSF
Protein Properties Length: 341aa    MW: 38266.9 Da    PI: 7.5852
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32086333PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-18038PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1141e-35281202103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+
     Han001101  28 FLTKAYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 115
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Han001101 116 RRKTS 120
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3720112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5824117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.12E-3425117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAMMLDHSSC DGGILLSLDS HKAVPAPFLT KAYQLVDDPT TDHIVSWGED DTTFVVWRPP  60
EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN EFFKKGEKHL LCEIHRRKTS  120
QPQVTLNHHH PHHFTGINGG GLHGGNGNNI FTYQPTRSIS PPDSDDHLYS DNSPPLASPT  180
TTATAGMLGI FHNTARGGNS VTALSEDNER LRRSNNMLMS ELAHMRKLYN DIIYFVQNHV  240
KPVTPSNSYP SSLLLSSNNA NINVNKSQQL HGSTMNNNVV DDNINVSKTK LFGVPLLSKK  300
RLHPEYGNNN NSNNTMVETH KARLVLENDD LGLNLMPPSP C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-222412017123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022034130.10.0heat stress transcription factor B-4-like
SwissprotQ9C6351e-112HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A251UZF60.0A0A251UZF6_HELAN; Putative winged helix-turn-helix DNA-binding domain, Heat shock transcription factor family
STRINGVIT_18s0001g10380.t011e-145(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-98heat shock transcription factor B4