PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001116
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C3H
Protein Properties Length: 339aa    MW: 36688.1 Da    PI: 7.2571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48338233PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-53304PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.6e-096488126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               +kt+ C+ f++ GtC+y  +C+FaH+
  Han001116 64 FKTKMCCKFRA-GTCPYVTNCNFAHS 88
               69*********.*************8 PP
2zf-CCCH44.52.5e-14218243126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ + +tG+C++G++C+FaHg
  Han001116 218 WKTRICNKWEQTGYCPFGSKCHFAHG 243
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-146196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-86194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6716390IPR000571Zinc finger, CCCH-type
SMARTSM003560.0366389IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-66488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6134162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.5134161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-7135162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-18212248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10214248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741217245IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-9217244IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-11218243IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
XGHLGTEDEY VNWNNESLTA DASSNSNHNG RQSQTRFGSE TPNRKPSGDS QANNRSKAIG  60
KMFFKTKMCC KFRAGTCPYV TNCNFAHSVE ELRKPPPNWQ EIVAAHEDER SEPREEYQIP  120
SLGSSGFIVE TQRSHKGRHC KKFYTEEGCP YGDSCTYLHD EQSRARESVA ICLGPGSGGG  180
YGGGGSNVND GGETYGGGGG GGTPLAASLN SAVKPSNWKT RICNKWEQTG YCPFGSKCHF  240
AHGATELHQN VGGLGDTDAK DPATVSDPNK QGMMVSKLAT DNMVVGSTPI AAQSDGYHVG  300
GQSQRLPGVI MRTGLRSFQK WKGPDKLSRI YGDWIDDIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022020956.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ84UQ31e-113C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A251RLI00.0A0A251RLI0_HELAN; Putative zinc finger, CCCH-type
STRINGXP_010096556.11e-144(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.14e-96C3H family protein