PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han001342

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

MYB_related

Protein Properties

Length: 312aa MW: 35377.6 Da PI: 7.4061

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32082116	PU_ref	Unigene	View CDS
PUT-169a-Helianthus_annuus-56431	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	89	133	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Han001342 89 RERWTEDEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 133 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.28E-17	83	139	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.583	84	138	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-8	86	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-17	87	136	IPR006447	Myb domain, plants
SMART	SM00717	3.5E-12	88	136	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-13	89	132	IPR001005	SANT/Myb domain
CDD	cd00167	3.17E-9	91	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
RGLTRFAHTQ LVHADQLQDP NFNSSSTYDK VMLSGYFEKS SGKVELDVER DERRVLCALV 60 VAQMDSNSSA SGETLNIKTR KPYTITKQRE RWTEDEHNRF LEALKLYGRA WQRIEEHIGT 120 KTAVQIRSHA QKFFTKLEKE AVAKGIPIGQ ALDMEIPPPR PKRKPNYPYP RKTDPKTHTQ 180 PAQKDEKQAT TLVSSLKLLD LEAKPLSEKT SHNEKLDNEK PNEEILTGTT EDPQEAENGS 240 YITNETRKHQ ELDQDGVKHT NITSNISLFD IQGVRTCPRH VPVQVVDVNQ GNMAKTSGPT 300 ETSLHESNVN NL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021983251.1	1e-160	protein LHY-like
Refseq	XP_021983252.1	1e-160	protein LHY-like
Refseq	XP_021983253.1	1e-160	protein LHY-like
TrEMBL	A0A251TXG0	1e-158	A0A251TXG0_HELAN; Putative myb domain, plant, Homeodomain-like protein
STRING	EOX95562	7e-58	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	2e-49	MYB_related family protein