PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han001364

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

C2H2

Protein Properties

Length: 311aa MW: 35222.6 Da PI: 9.1251

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48353188	PU_unref	Unigene	View CDS
PUT-169a-Helianthus_annuus-55945	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Han001364 6 FMCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.7	0.0004	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Han001364 83 WKCDKCSKRYAVQSDWKAHSKIC 105 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.27E-8	5	28	No hit	No description
PROSITE profile	PS50157	10.99	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	6	28	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.5E-5	6	28	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	76	48	78	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.7E-5	71	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.27E-8	78	103	No hit	No description
SMART	SM00355	140	83	103	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MATNRFMCEI CNKGFQRDQN LQLHRRGHNL PWKLKQKSKL EVIRKKVYVC PEPSCVHHDP 60 SRALGNLTGI KKHFSRKHGE KKWKCDKCSK RYAVQSDWKA HSKICGTREY RCDCGTLFSR 120 RDSFITHRAF CDALAEETGR FSSSTLNNLP LHLPINFPLK TEPQLVLQHP QLSFNVGSST 180 PHHNHQLPSW LNPTHQQQQQ QEENPNLDHN IHLPSPSSHM SATALLQKAA QMGVTMSNPT 240 PPSTANTPAI ILTGSHQTLQ HDHMCAPLLS SHHHPSGLSX LSSSDNHHVM LEQARGFYWH 300 TSCMDSCSSS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-36	79	148	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-36	79	148	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	45	KQKSKLEVIRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Han.10259	0.0	embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022028798.1	0.0	protein indeterminate-domain 11-like
Refseq	XP_022028799.1	0.0	protein indeterminate-domain 11-like
Refseq	XP_022028800.1	0.0	protein indeterminate-domain 11-like
Swissprot	Q8H1F5	2e-95	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A251V859	0.0	A0A251V859_HELAN; Putative zinc finger C2H2-type/integrase DNA-binding domain-containing protein
STRING	Migut.A00127.1.p	1e-107	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	5e-96	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]