PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001541
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB
Protein Properties Length: 298aa    MW: 32865.8 Da    PI: 6.6205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32080138PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-60094PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.1e-1963108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd +l d+v ++G ++W++Iar ++ gRt+k+c++rw + 
        Han001541  63 KGSWSPEEDAILSDLVSKFGAKNWSLIARGIP-GRTGKSCRLRWCNQ 108
                      799*****************************.***********985 PP
2Myb_DNA-binding53.17.4e-17115159147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T  Ed ++++a+k +G++ W++Ia+ ++ gRt++ +k++w++ 
        Han001541 115 RKPFTDAEDRIIIEAHKVHGNK-WALIAKLLQ-GRTDNAIKNHWNST 159
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.53858113IPR017930Myb domain
SuperFamilySSF466893.31E-3160156IPR009057Homeodomain-like
SMARTSM007174.8E-1662111IPR001005SANT/Myb domain
PfamPF002491.5E-1763108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2564116IPR009057Homeodomain-like
CDDcd001671.04E-1565107No hitNo description
SMARTSM007175.2E-15114162IPR001005SANT/Myb domain
PROSITE profilePS5129421.777115164IPR017930Myb domain
PfamPF002497.8E-15115159IPR001005SANT/Myb domain
CDDcd001672.43E-12117160No hitNo description
Gene3DG3DSA:1.10.10.601.1E-22117163IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
GYNKIEVQAM NKEEKIEEMK DDAGDAVVMV EKEMNKASSK EAGGEVVDEP MVEGGGEERG  60
KVKGSWSPEE DAILSDLVSK FGAKNWSLIA RGIPGRTGKS CRLRWCNQLD PAVMRKPFTD  120
AEDRIIIEAH KVHGNKWALI AKLLQGRTDN AIKNHWNSTL RRRCILRNTY ITPSTINYNN  180
LDTTIASNEN NTYPTKPTET EDVTTHYISQ DPISTHQTVS RPAPHYGAFS VFNNGIQNGE  240
PKMIVPTQGP LIQACKPESV GCKFLNGYST EPVVPSRCGH GCCSGSQPSL LGPEFVEX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-39621646108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022006386.10.0transcription factor MYB1-like
SwissprotQ425756e-65MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A251SLA70.0A0A251SLA7_HELAN; Putative myb domain protein 25
STRINGVIT_13s0019g03200.t011e-85(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-80myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]