PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001690
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB_related
Protein Properties Length: 290aa    MW: 32297.4 Da    PI: 9.1646
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32087915PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-46880PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.46.1e-121464146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +++++G+g Wk I +          R+  ++k++w++
        Han001690 14 KQKWTAEEEEALRAGIAKHGTGKWKNIQKDPEfnhllHSRSNIDLKDKWRN 64
                     79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.432970IPR017930Myb domain
SuperFamilySSF466895.89E-161167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-151265IPR009057Homeodomain-like
SMARTSM007179.4E-91368IPR001005SANT/Myb domain
PfamPF002491.1E-81464IPR001005SANT/Myb domain
CDDcd116602.93E-201565No hitNo description
SuperFamilySSF467851.03E-14127208IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.0E-15127192IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.937129197IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.6E-13129195IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.1E-10132190IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
XGSEWWRSDM GNPKQKWTAE EEEALRAGIA KHGTGKWKNI QKDPEFNHLL HSRSNIDLKD  60
KWRNMSVSAN GQGPREKSRT PKPKCNTDSP AMPLAIPQAH GPSPPVAVDP VSTDLNMDDG  120
SKCLLDGKTA SKYNAMIYDA LSTLKDPNGS STSAIVCFIE KRHEVPPNFR RLLTARLRRL  180
VAQEKLEKVQ NCYRLRREVL SGTKGPIPKP KENWPRLSSP FNSHLGETLE EAAVAAAYKV  240
AEAENKSFVA AEAVKEAERV SKMAEDTEAF LQLAKEVYER CSRGEVVMVA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021990563.11e-162telomere repeat-binding factor 4-like
SwissprotF4I7L14e-74TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A251TQD51e-161A0A251TQD5_HELAN; Putative single myb histone 3
STRINGXP_009757029.11e-123(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.18e-64MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]