PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001817
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ARF
Protein Properties Length: 283aa    MW: 31581 Da    PI: 7.0334
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32076581PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-16056PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23126226198
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++ +++a+++       +++    ++l+  d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD ++F   + +++el+
  Han001817 126 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDLRGNEWRFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGENGELH 221
                99****************************964333..4459************************************************..449999** PP

                EEEE- CS
         B3  94 vkvfr 98 
                v+v+r
  Han001817 222 VGVRR 226
                ***98 PP
2Auxin_resp30.51.5e-11252282131
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekv 31 
                 a+ha++t++ F+v+Y+Pr+s+seF+v+++++
   Han001817 252 ASHAIATGTLFSVFYKPRTSRSEFIVSLKQY 282
                 789************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-43115255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-40122241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-21124226No hitNo description
SMARTSM010194.8E-22126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42126228IPR003340B3 DNA binding domain
PfamPF023621.5E-21126226IPR003340B3 DNA binding domain
PfamPF065071.6E-8252282IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAHIAAAHYA GGPQSGSVDE LYKELWHACA GPLVNVPREG ERVYYFPQGH MEQLEASMHQ  60
GLDQQLPSFD LPAKILCKVM NVQLRAEPET DEVYAQITLL PERDQSDVTS PDPPLPEPPS  120
CTVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMSQQ PPWQELVASD LRGNEWRFRH  180
IFRGQPRRHL LTTGWSVFVS AKKLVAGDAF IFLRGENGEL HVGVRRLMRL LNNMPSSVIS  240
SHSMHLGVLA TASHAIATGT LFSVFYKPRT SRSEFIVSLK QYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17252833281Auxin response factor 1
4ldw_A1e-17252833281Auxin response factor 1
4ldw_B1e-17252833281Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}.
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021994418.10.0auxin response factor 1
RefseqXP_021994419.10.0auxin response factor 1
RefseqXP_021994420.10.0auxin response factor 1
SwissprotQ8L7G01e-168ARFA_ARATH; Auxin response factor 1
TrEMBLA0A251TCS70.0A0A251TCS7_HELAN; Auxin response factor
STRINGMigut.B00723.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-166auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]