PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001829
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family RAV
Protein Properties Length: 283aa    MW: 32026.8 Da    PI: 9.759
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32085042PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-31489PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.5e-1362110155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a ++++g
  Han001829  62 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNDEDEAAKAYDVAVQRFRG 110
                78****9888.8*********3.....5**********99************998 PP
2B385.44.9e-27189269177
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed+ +++W+++++y+++s++yvltkGW++Fvk+++Lk  
  Han001829 189 FQKTVTPSDVGKLNRLVIPKQHAEKHfpvqKGSNSKGVLLHFEDKGSKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKPE 269
                99****************************7777899*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.85E-2362116No hitNo description
PfamPF008471.6E-762110IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1662117IPR016177DNA-binding domain
PROSITE profilePS5103219.30963118IPR001471AP2/ERF domain
SMARTSM003808.1E-2663124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1863118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.2E-34181267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-26184267IPR015300DNA-binding pseudobarrel domain
CDDcd100176.43E-25187268No hitNo description
PfamPF023624.2E-24189270IPR003340B3 DNA binding domain
PROSITE profilePS5086311.744189283IPR003340B3 DNA binding domain
SMARTSM010191.2E-16189282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDTSCIDDQT TTSEKISNIA PHVPTTLHME ISLCRVGSGS SVVLDPEGGV EVEAQSRKLP  60
SSRYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNDEDEAAKA YDVAVQRFRG RDAVTNIKQV  120
DADDKEAAME ASFLSRHSKS EIVDMLRKHT YNDELEQSKR SCTSHQTLSQ TGLTNTTRLV  180
SMKPREHLFQ KTVTPSDVGK LNRLVIPKQH AEKHFPVQKG SNSKGVLLHF EDKGSKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKNLKPEI ASAFKAQPDR ISX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-41182266185B3 domain-containing transcription factor NGA1
5os9_B4e-41182266185B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746260.11e-154AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-118RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A251S4M10.0A0A251S4M1_HELAN; Putative ethylene response DNA binding factor 3
STRINGXP_002524409.11e-130(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-121related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]