PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002046
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 273aa    MW: 30714.8 Da    PI: 9.2836
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32076307PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-21147PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-18128182256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tk q   Le++F+ ++ ++ ++++eLA++l+L  rqV vWFqNrRa+ k
  Han002046 128 RKKLRLTKPQSALLEQAFKHHSSLNPKQKQELARELKLRPRQVEVWFQNRRARTK 182
                678899***********************************************98 PP
2HD-ZIP_I/II116.61.4e-37128217191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k q++lLE+ F++++ L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E+++e+Lk+++++l++en+rL+ke +eL+ +l
    Han002046 128 RKKLRLTKPQSALLEQAFKHHSSLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEMNFEHLKKCCEKLTDENRRLQKELQELK-AL 217
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-18108185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-18121188IPR009057Homeodomain-like
PROSITE profilePS5007116.876124184IPR001356Homeobox domain
SMARTSM003891.2E-15126188IPR001356Homeobox domain
CDDcd000861.36E-15128185No hitNo description
PfamPF000461.3E-15128182IPR001356Homeobox domain
PROSITE patternPS000270159182IPR017970Homeobox, conserved site
PfamPF021835.0E-8184218IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.0E-21184227IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEFDSVCGTG LTLGLSLNSS PSMVNLNTMD STKQPSFEPS LTLGLSRSHG DQNGRVATKV  60
GDIRMLYRQD SAVISGGGSS FSNKSSKRER EVGSEESERV SNDNNYSRVM SATSVDDGED  120
DDDCANGRKK LRLTKPQSAL LEQAFKHHSS LNPKQKQELA RELKLRPRQV EVWFQNRRAR  180
TKLKQTEMNF EHLKKCCEKL TDENRRLQKE LQELKALKSS QPFYMQLPAA TLTMCPSCER  240
IGDTKSALVK NLLLWVPNHT FSIPSLIHLQ PVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022011573.10.0homeobox-leucine zipper protein HAT22-like isoform X2
SwissprotP466043e-73HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A251S7B50.0A0A251S7B5_HELAN; Putative homeobox-leucine zipper protein family
STRINGVIT_00s0732g00010.t012e-82(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-54HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]