PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002138
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30898.4 Da    PI: 4.5053
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32091020PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-31210PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1956109356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++++q+++Le+ Fe+++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Han002138  56 KKRRLSANQVKALEKNFEMENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 109
                45689************************************************9 PP
2HD-ZIP_I/II132.41.7e-4255147193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls++qvk+LE++Fe+e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ ++L++++e+L +++ke
    Han002138  55 EKKRRLSANQVKALEKNFEMENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKSNYDSLKDNYDSLKQDNESLLKQIKE 147
                  69****************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-1946113IPR009057Homeodomain-like
SMARTSM003893.4E-1754115IPR001356Homeobox domain
PROSITE profilePS5007117.00655111IPR001356Homeobox domain
PfamPF000462.9E-1656109IPR001356Homeobox domain
CDDcd000862.49E-1656112No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2058118IPR009057Homeodomain-like
PRINTSPR000316.9E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000316.9E-691107IPR000047Helix-turn-helix motif
PfamPF021832.3E-17111152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKRHGSSDSI VGLLPMCQTL EESSSPVGYT RKFQSMLMDG LEEDCVGGGE CVQIEKKRRL  60
SANQVKALEK NFEMENKLEP DRKVKLAQEL GLQPRQVAVW FQNRRARWKT KQLERDYGVL  120
KSNYDSLKDN YDSLKQDNES LLKQIKELKS KLYGDDEQSN VPMQEQCEDK PKSLENMIET  180
TYFPDFKDGS SDSDSSAIMN EENSGATADM IKDSRAIMGD AQKAYQPQFV KLEEHNFFGG  240
DESCNFFSDD QAPTLQWYCQ DQWNLSEEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.4920.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022010972.10.0homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J18e-73ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A251S6D50.0A0A251S6D5_HELAN; Putative homeobox protein 6
STRINGPOPTR_0005s07290.11e-100(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-70homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]