PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han002313

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

Protein Properties

Length: 261aa MW: 29919.9 Da PI: 7.9904

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48349664	PU_unref	Unigene	View CDS
PUT-169a-Helianthus_annuus-21355	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.4	4e-16	165	242	1	84
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +++s+v + +l lp +f++eh ++++ ++lede+g++ e +i +++ l++GW+ F+ +++L++gD ++F+ Han002313 165 FVKSMVRSHVYSCFWLGLPQRFCREHLP--KSTVSMVLEDEDGNECEAVFISSRT----GLSGGWRAFALEHKLDDGDALLFQC 242 89**********************53..36789***********44444....4********************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.9E-17	157	242	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-20	159	244	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.20E-21	163	240	No hit	No description
SMART	SM01019	6.0E-13	165	258	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-14	165	243	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.207	165	258	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
XAGIFWNAIA IPSFFTLLGW LSFIALHLMA EEITSNSYEE ARKQQLLENK KRFEDLGILT 60 ISKTLSDLSK SEKKSKQREV KPKIRNGPVV EPRRSTRERN PIVSYQDDLD IGLPSIRRSK 120 SSSSWSSYLA RPLEEVRMAS YEAGIEAIKA AEKLQSNLQS EYPSFVKSMV RSHVYSCFWL 180 GLPQRFCREH LPKSTVSMVL EDEDGNECEA VFISSRTGLS GGWRAFALEH KLDDGDALLF 240 QCFTHKIQEY IVNHHMMEFR S

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Han.10261	0.0	embryo

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022000107.1	1e-144	putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	3e-60	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A251SNT7	1e-143	A0A251SNT7_HELAN; Putative DNA-binding pseudobarrel domain-containing protein
STRING	XP_009793972.1	1e-101	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-47	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]