PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002357
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NF-YA
Protein Properties Length: 259aa    MW: 28687.9 Da    PI: 9.3056
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48343703PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-15659PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.3e-32128183258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                ep+YVNaKQy +Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR RgsgGrF
  Han002357 128 EPVYVNAKQYPAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHAMRRIRGSGGRF 183
                8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.5E-35125186IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.402126186IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-27128183IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-23129151IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860131151IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-23160183IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSTTAMRRNS SDSSSSEESL DKESQSDDVV SEEDDDVSKE TQNGPSFRSD SCGQEHKSCR  60
QQGLPNVLPS NGETLRQVPQ LELVGHSVAC APNPYYGGMM TAYGQPLVHP QFVDMQTRMP  120
LTLEMAPEPV YVNAKQYPAI LRRRQSRAKA ELEKKLIKDR KPYLHESRHQ HAMRRIRGSG  180
GRFAKKTEIE SLKNTTASGS PNSVKSKRVH SESAETPRVG SVLSQNYQAS SGYHLHSSDR  240
GKQWINISSN PAAQSAVAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-19128191366NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021973411.10.0nuclear transcription factor Y subunit A-9-like isoform X1
SwissprotQ9LXV52e-48NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A251UCQ50.0A0A251UCQ5_HELAN; Putative nuclear factor Y, subunit A1
STRINGXP_006470619.12e-71(Citrus sinensis)
STRINGXP_006446125.12e-71(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-49nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]