PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002473
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family B3
Protein Properties Length: 254aa    MW: 28806.1 Da    PI: 10.3483
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48325138PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-2072PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.9e-15133223199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+k+++ s+v++  ++ lp +f +++  +k ++  +++ede+g++ + kli  +    y l++GW+eF+  ++L+egD+++F+l+++ +f  +v ++r+
  Han002473 133 FIKTMLGSHVTRCFWMGLPFRFGRSFL-PK-QDSLMVIEDENGEQSNCKLIAYR----YGLSAGWREFAVRHKLREGDVLIFQLVESCKF--KVYIVRA 223
                89*********************9994.33.44589**************4444....55************************998888..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-19127224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-22128225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-25131222No hitNo description
PfamPF023624.8E-13133223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224133224IPR003340B3 DNA binding domain
SMARTSM010191.3E-17133224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAASPMNNTE PTPDLQLAIV EWKPPNLPEP FVTIAQLPPS KTSPLAPLTP SSELSGIRKR  60
KRLKPEKLEF SSIYVEKKRS SSKDKAVHDP SRRRLRLGKE NATKGCKAPV KISQAMIRAR  120
EVQSTLGNEH PTFIKTMLGS HVTRCFWMGL PFRFGRSFLP KQDSLMVIED ENGEQSNCKL  180
IAYRYGLSAG WREFAVRHKL REGDVLIFQL VESCKFKVYI VRANDLKEVD GAVSDITHNA  240
HERHMTTATI KQYX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15764RKRKRLKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.99160.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021972797.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A251UDD20.0A0A251UDD2_HELAN; Putative DNA-binding pseudobarrel domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-34B3 family protein