PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002520
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family GRF
Protein Properties Length: 252aa    MW: 28556.6 Da    PI: 8.6825
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48346999PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-2608PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.78.7e-2375119145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCs++v++++k+CEr +hrgr+rs k++e+
  Han002520  75 DPEPGRCRRTDGKKWRCSKEVYPDSKYCERRMHRGRNRSGKPVEA 119
                79***************************************9986 PP
2QLQ59.41e-20742237
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               +FT +Q+q+L++Q+l+yKy+++++P+Pp+Ll+ iq+
  Han002520  7 PFTSTQWQELEHQALVYKYMISGMPIPPDLLFSIQR 42
               8*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.5E-13642IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-15741IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.559742IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.67575119IPR014977WRC domain
PfamPF088791.8E-1876118IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MASSRFPFTS TQWQELEHQA LVYKYMISGM PIPPDLLFSI QRSLDSSTKL FLHHQSPLQS  60
IGREYFQMGF GRKIDPEPGR CRRTDGKKWR CSKEVYPDSK YCERRMHRGR NRSGKPVEAP  120
NNTPPLQMCT KSPNYPSQTS HPSXIYPPQL SSRSSGSVLS SQDHFLLESS PYPHSEXDHS  180
YGMKEDVDEH PYLSESCGGG AISASMSDSW HLEPLAMKNS SLANHNPTAF FSDYQMKLLV  240
SKHLMQNNKA GG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021970380.11e-146growth-regulating factor 3-like
TrEMBLA0A251UI581e-145A0A251UI58_HELAN; Putative WRC domain, Glutamine-Leucine-Glutamine, QLQ, Growth-regulating factor
STRINGVIT_11s0016g01250.t019e-70(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-52growth-regulating factor 5