PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002587
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family WOX
Protein Properties Length: 249aa    MW: 27927 Da    PI: 6.3626
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32089810PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-43076PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.93.1e-2279139257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Han002587  79 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 139
                89*****************99**************************************97 PP
2Wus_type_Homeobox101.55.8e-3379141365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+l+++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
          Han002587  79 RQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 141
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.33775140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-1877144IPR009057Homeodomain-like
SMARTSM003891.4E-1577144IPR001356Homeobox domain
SuperFamilySSF466891.41E-1977143IPR009057Homeodomain-like
CDDcd000866.76E-1579141No hitNo description
PfamPF000465.0E-2079139IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEQDEGNNNN NNGGMFVKVM TDEQMEVLRK QIAIYATICE QLVDLHKSLT SHHDLAGVRL  60
GNIYNDPLVT SGGHKFSGRQ RWTPTPVQLQ ILERLFEQGN GTPSKQKIKE ITSELSQHGQ  120
ISETNVYNWF QNRRARSKRK QQVSAPNNNG ESEVETEVES PKPQQNSTST ADDNMCFQNP  180
NACSVDQRAK KVEPVFPSDA SSKPAGNVGQ MSYYGSMLSN PRMDRIIGKM EVPGSYQSYM  240
QGDEYNMTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022012271.10.0WUSCHEL-related homeobox 8-like isoform X1
SwissprotQ5QMM39e-85WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A251SB260.0A0A251SB26_HELAN; Putative WUSCHEL-related homeobox 8
STRINGSolyc02g082670.2.11e-121(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.15e-77WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]