PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han002599

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

bHLH

Protein Properties

Length: 249aa MW: 26868 Da PI: 6.2995

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32084027	PU_unref	Unigene	View CDS
PUT-169a-Helianthus_annuus-35537	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	1.9e-10	159	205	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Han002599 159 HSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 205 999********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.52E-10	152	209	No hit	No description
SuperFamily	SSF47459	9.29E-18	152	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.51	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-18	156	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-8	159	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDPPIINESS FSAANPSSYT LTGIWPFNGT RIEDLGLKMG TLIAPIGDPN TNNNNNPDDE 60 STVTEYSGGG GRKRRDPNFE DEGSKIVSTS SAIDLNKLNG KRMKVSGLKD ESGGGSKMDQ 120 EMSSGSGSKA PVGQAQKAAE PPKDYIHVRA RRGEATDRHS LAERARREKI SERMKILQDL 180 VPGCNKVIGK ALVLDEIINY IQSLQHQVEF LSMKLEAVNT RMALPVEGVP TKDLGPQPLD 240 AAGLLFGSX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022039083.1	0.0	transcription factor bHLH79-like
Swissprot	Q9LV17	2e-71	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A251UTE9	1e-179	A0A251UTE9_HELAN; Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRING	XP_006476705.1	1e-104	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-72	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]