PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002636
Common Nameham59
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28350.1 Da    PI: 9.5855
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18764430PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-52572PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312473150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Han002636 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
               79***********************************************8 PP
2K-box106.43.3e-35951927100
      K-box   7 ksleeakaeslqqelakLkkeienLq....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 s++ea+a+ +qqe+akL+++i nLq    +  R+++Ge+L+++  k+L++Le +Lek++++iRskKnell+++ie++ k+e+el+++n+ Lr+k++e
  Han002636  95 GSVAEANAQFYQQEAAKLRQQIANLQnqnrQFYRNIMGESLGNMPAKDLKNLEGKLEKGISRIRSKKNELLFAEIEYMPKRENELHNNNQFLRAKIAE 192
                45899*********************5433334789***********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-411675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6691676IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-331788IPR002100Transcription factor, MADS-box
CDDcd002654.47E-461786No hitNo description
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-331838IPR002100Transcription factor, MADS-box
PfamPF003199.3E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-335374IPR002100Transcription factor, MADS-box
PfamPF014863.5E-25100190IPR002487Transcription factor, K-box
PROSITE profilePS5129714.559102196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSFPNESGEM SPQRKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKGT IDRYKKACLD PPSSGSVAEA NAQFYQQEAA KLRQQIANLQ  120
NQNRQFYRNI MGESLGNMPA KDLKNLEGKL EKGISRIRSK KNELLFAEIE YMPKRENELH  180
NNNQFLRAKI AENERSQQQH MSLMPGSSDY DLVPPHQPFD GRNYLQVNDL QPNNSYSCQD  240
QTPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q2e-201684169Myocyte-specific enhancer factor 2B
1tqe_R2e-201684169Myocyte-specific enhancer factor 2B
1tqe_S2e-201684169Myocyte-specific enhancer factor 2B
5f28_A2e-201684169MEF2C
5f28_B2e-201684169MEF2C
5f28_C2e-201684169MEF2C
5f28_D2e-201684169MEF2C
6byy_A3e-201684169MEF2 CHIMERA
6byy_B3e-201684169MEF2 CHIMERA
6byy_C3e-201684169MEF2 CHIMERA
6byy_D3e-201684169MEF2 CHIMERA
6c9l_A2e-201684169Myocyte-specific enhancer factor 2B
6c9l_B2e-201684169Myocyte-specific enhancer factor 2B
6c9l_C2e-201684169Myocyte-specific enhancer factor 2B
6c9l_D2e-201684169Myocyte-specific enhancer factor 2B
6c9l_E2e-201684169Myocyte-specific enhancer factor 2B
6c9l_F2e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022017231.10.0floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ408721e-140AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLQ84LC30.0Q84LC3_HELAN; MADS-box transcriptional factor HAM59
STRINGXP_010687169.11e-131(Beta vulgaris)
STRINGPGSC0003DMT4000731341e-131(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-121MIKC_MADS family protein