PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002655
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C2H2
Protein Properties Length: 246aa    MW: 26403.1 Da    PI: 7.4781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32078633PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-30890PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000236989121
               EEETTTTEEESSHHHHHHHHH CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
               ++C+ C+ s+ +k+ L++H +
  Han002655 69 FQCEVCNISCDTKDVLEKHKQ 89
               89*****************76 PP
2zf-C2H2120.00065199219121
                EEETTTTEEESSHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                ++C++C+ ++++ ++L++Hi 
  Han002655 199 FPCEICKIVCTSGELLNTHIA 219
                89*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-861100No hitNo description
SMARTSM004513.0E-466100IPR003604Zinc finger, U1-type
Gene3DG3DSA:3.30.160.602.0E-46895IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128743.7E-66993No hitNo description
SMARTSM003550.0266993IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807193IPR007087Zinc finger, C2H2
SMARTSM004510.021139173IPR003604Zinc finger, U1-type
SuperFamilySSF576675.63E-8140169No hitNo description
SMARTSM003550.43142166IPR015880Zinc finger, C2H2-like
PfamPF128744.3E-7143166No hitNo description
PROSITE patternPS000280144166IPR007087Zinc finger, C2H2
SuperFamilySSF576677.04E-9191231No hitNo description
SMARTSM004516.7E-5196230IPR003604Zinc finger, U1-type
SMARTSM003550.69199223IPR015880Zinc finger, C2H2-like
PfamPF128742.2E-6201223No hitNo description
PROSITE patternPS000280201223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSAIIPNITS YSTPDPNPPP YAFGLHDLSE LELVGAATDA PPHEHVVATM SETTNAVFVT  60
RQPENILPFQ CEVCNISCDT KDVLEKHKQG RKHLKRMKRL ADSSANPPNM VPLSVASETV  120
ARELENKKQR LLQNGATAGT LLSCDVCNVI CNNQEGFQQH VASKKHAAKS VIQLASTNAV  180
FDATSDSSGG GSQKTLVGFP CEICKIVCTS GELLNTHIAG KKHLKKLKEL GQIPNLPLAA  240
IASQDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022039279.11e-150zinc finger protein 346-like
TrEMBLA0A251USJ51e-148A0A251USJ5_HELAN; Putative zinc finger, U1-type, Zinc finger C2H2-type/integrase DNA-binding domain protein