PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han002670

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

MYB_related

Protein Properties

Length: 246aa MW: 27126.8 Da PI: 10.0877

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48336935	PU_unref	Unigene	View CDS
PUT-169a-Helianthus_annuus-349	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.4	1.2e-11	39	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W+ E++++++a +++ + Wk+I + +g +t q++s+ qky Han002670 39 RESWSDPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 83 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-15	33	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.922	34	88	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-5	37	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.8E-18	37	86	IPR006447	Myb domain, plants
SMART	SM00717	5.2E-9	38	86	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-9	39	83	IPR001005	SANT/Myb domain
CDD	cd00167	4.08E-7	41	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MAIPNIGSFS APTDVVAPPS PADDASKKIR KPYTITKSRE SWSDPEHDKF LEALQLFDRD 60 WKKIEAFIGS KTVIQIRSHA QKYFLKVQKN GTNEHLPPPR PKRKATHPYP QKAAKNVPAV 120 FQVTTSFQTA ALSEPGFVQG TNSPTLVKQS ASDAAICSTI RNPKDLSSLS QMVKDDRVST 180 SQSTDNNCCS SNERALKTQP ANEIHELQLR VLPDFAQVYG FIGSVFDPNT VALAGLRRGP 240 IVLNRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022006707.1	1e-167	protein REVEILLE 6-like
Swissprot	Q8H0W3	1e-71	RVE6_ARATH; Protein REVEILLE 6
Swissprot	Q8RWU3	7e-72	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A251SNW7	1e-166	A0A251SNW7_HELAN; Putative homeodomain-like superfamily protein
STRING	XP_009802901.1	8e-92	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	3e-74	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]