PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han002724

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

NAC

Protein Properties

Length: 243aa MW: 26856.8 Da PI: 9.0065

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S18733347	PU_ref	Unigene	View CDS
PUT-169a-Helianthus_annuus-39106	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	59.1	1.5e-18	2	49	82	128
NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+v+++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl Han002724 2 YWKATGTDKPVMTSgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 49 9**********977788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	28.077	1	83	IPR003441	NAC domain
Pfam	PF02365	1.1E-7	2	49	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-22	2	83	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
XYWKATGTDK PVMTSGGTQK VGVKKALVFY GGKPPKGVKT NWIMHEYRLT DGKTISKPHG 60 SDPTKQKGSL RLDDWVLCRT YKKSNTQRPM DSDGCDHHTM TGMLASIPPS ISLAGGHHPM 120 MQNQETNLLF DVRMNSNETE TDNNTNTNTN NITNLLPLKR SLSGLFWTEE GANGNTGNSS 180 ATYTKRFLTP ESNSDISPMA TRTNEENSGS IASLLSQLPQ TPQLQQQTML GSIEDGVYRH 240 PYQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-27	2	86	97	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-27	2	86	97	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-27	2	86	97	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-27	2	86	97	168	NO APICAL MERISTEM PROTEIN
3swm_A	5e-27	2	86	100	171	NAC domain-containing protein 19
3swm_B	5e-27	2	86	100	171	NAC domain-containing protein 19
3swm_C	5e-27	2	86	100	171	NAC domain-containing protein 19
3swm_D	5e-27	2	86	100	171	NAC domain-containing protein 19
3swp_A	5e-27	2	86	100	171	NAC domain-containing protein 19
3swp_B	5e-27	2	86	100	171	NAC domain-containing protein 19
3swp_C	5e-27	2	86	100	171	NAC domain-containing protein 19
3swp_D	5e-27	2	86	100	171	NAC domain-containing protein 19
4dul_A	5e-27	2	86	97	168	NAC domain-containing protein 19
4dul_B	5e-27	2	86	97	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021992824.1	1e-179	NAC transcription factor 25-like
TrEMBL	A0A251T7S4	1e-177	A0A251T7S4_HELAN; Putative NAC domain containing protein 25
STRING	EOY12852	2e-75	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	2e-45	NAC domain containing protein 2