PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han002821

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

GRAS

Protein Properties

Length: 238aa MW: 27584.1 Da PI: 6.6783

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32083983	PU_ref	Unigene	View CDS
PUT-169a-Helianthus_annuus-39174	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	209.2	2.3e-64	16	235	154	373
GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 +e ++etg+rLa+f+++ +vpfe+n+++++++e++++eeL+++++E+laVn v++ ++lldesv+++s+rd vLkl+++++P+++v + + ++ns+ F Han002821 16 PAEGVQETGRRLADFCAKYNVPFEYNAIATHHWESIKVEELKLQRNECLAVNTVIRFKNLLDESVTVDSPRDGVLKLIRDMKPDIFVQTVANGSYNSPFF 115 67899********************9999***************************************************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353 + rf eal ++s++fd+++a+l r++e+r + E+e++gre+ nv+acegae +er et+++W+erl++aGFk pl+++++++ ++ ++ + + + +e Han002821 116 VPRFKEALFHFSSMFDMFDATLDRNDEQRLNFEKEFFGREAINVIACEGAELVERPETYKQWQERLSRAGFKIKPLNHEIVSKLRASMKSGYHRDFVFDE 215 ************************************************************************************9999899* PP GRAS 354 esgslvlgWkdrpLvsvSaW 373 + +++++gWk+r L++ S+W Han002821 216 DGEWVLQGWKGRILMASSCW 235 ****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	35.383	1	216	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-62	16	235	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
XARIPESSSR NLGFRPAEGV QETGRRLADF CAKYNVPFEY NAIATHHWES IKVEELKLQR 60 NECLAVNTVI RFKNLLDESV TVDSPRDGVL KLIRDMKPDI FVQTVANGSY NSPFFVPRFK 120 EALFHFSSMF DMFDATLDRN DEQRLNFEKE FFGREAINVI ACEGAELVER PETYKQWQER 180 LSRAGFKIKP LNHEIVSKLR ASMKSGYHRD FVFDEDGEWV LQGWKGRILM ASSCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-17	18	237	170	380	Protein SCARECROW
5b3h_A	8e-17	18	237	169	379	Protein SCARECROW
5b3h_D	8e-17	18	237	169	379	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022010413.1	1e-165	scarecrow-like protein 14
Swissprot	P0C884	1e-100	SCL34_ARATH; Scarecrow-like protein 34
Swissprot	Q3EDH0	1e-100	SCL31_ARATH; Scarecrow-like protein 31
Swissprot	Q9XE58	1e-100	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A251VDE9	1e-164	A0A251VDE9_HELAN; Putative SCARECROW-like 14
STRING	XP_009764837.1	1e-115	(Nicotiana sylvestris)
STRING	XP_009606498.1	1e-115	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	1e-103	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]