PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han002848

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

NAC

Protein Properties

Length: 237aa MW: 27120.1 Da PI: 9.5676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-6563	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171	3.6e-53	6	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+++d+yk++Pw+Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g+ v Han002848 6 LPPGFRFYPTDEELLVQYLCRKVAGHDFSL-QIIADIDLYKFDPWQLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITT-EGRRV 103 79*************************9.89***********8777899**********************************99.9999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkg+kt+W+mheyrl Han002848 104 GIKKALVFYVGKAPKGNKTNWIMHEYRL 131 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-67	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	61.151	6	154	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	7	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MTQLSLPPGF RFYPTDEELL VQYLCRKVAG HDFSLQIIAD IDLYKFDPWQ LPSKAMFGEK 60 EWYFFSPRDR KYPNGSRPNR VAGSGYWKAT GTDKVITTEG RRVGIKKALV FYVGKAPKGN 120 KTNWIMHEYR LSDPQRKTGS SRLDEWVLCR IYKKNSSAQK TISGGQTTEQ SHGSPSSSSS 180 QFDDVLESLP EIQDRCFNLT RVNSIKTFXQ EEPKLNLQKF DSGHYDWASI ASFGLPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-105	1	160	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-105	1	160	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-105	1	160	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-105	1	160	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-105	1	160	15	174	NAC domain-containing protein 19
3swm_B	1e-105	1	160	15	174	NAC domain-containing protein 19
3swm_C	1e-105	1	160	15	174	NAC domain-containing protein 19
3swm_D	1e-105	1	160	15	174	NAC domain-containing protein 19
3swp_A	1e-105	1	160	15	174	NAC domain-containing protein 19
3swp_B	1e-105	1	160	15	174	NAC domain-containing protein 19
3swp_C	1e-105	1	160	15	174	NAC domain-containing protein 19
3swp_D	1e-105	1	160	15	174	NAC domain-containing protein 19
4dul_A	1e-105	1	160	12	171	NAC domain-containing protein 19
4dul_B	1e-105	1	160	12	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269\|PubMed:25005917}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021992825.1	1e-163	NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	1e-133	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A251T7X7	1e-162	A0A251T7X7_HELAN; Putative NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
STRING	XP_009594219.1	1e-132	(Nicotiana tomentosiformis)
STRING	PGSC0003DMT400049665	1e-132	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-116	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]