PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002857
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27173.3 Da    PI: 9.6864
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32093174PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-56368PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.2e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr g+lKKA+E+SvLCd++v +i+fs++gkl ey++
  Han002857  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDVDVPLIVFSTKGKLSEYAT 59
               79***********************************************86 PP
2K-box92.29e-3177173399
      K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                +++ + ++++ + s++ elakLk++ e Lq++qR+++GedL+sLs+keL +LeqqLe +l++ R kKn+++le+i+elqkk k+lq++n  L kk++
  Han002857  77 EKELNGTNNQSEGSWTLELAKLKAKFELLQKNQRNFMGEDLDSLSIKELLNLEQQLEAALRRLRLKKNQMMLESISELQKKDKSLQDQNSLLLKKIK 173
                5666777888899*********************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.179161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-31288IPR002100Transcription factor, MADS-box
CDDcd002651.10E-37275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-2586172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.94288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD VDVPLIVFST KGKLSEYATN  60
ASMVRILERY EQHSYTEKEL NGTNNQSEGS WTLELAKLKA KFELLQKNQR NFMGEDLDSL  120
SIKELLNLEQ QLEAALRRLR LKKNQMMLES ISELQKKDKS LQDQNSLLLK KIKGKEKELA  180
EPPLVDQQTK ENMVSFQLNL GEAYQAAGCD GQLEDTQRES QPLTVIPYWM LNLMSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-18174173Myocyte-specific enhancer factor 2B
1tqe_Q2e-18174173Myocyte-specific enhancer factor 2B
1tqe_R2e-18174173Myocyte-specific enhancer factor 2B
1tqe_S2e-18174173Myocyte-specific enhancer factor 2B
6c9l_A2e-18174173Myocyte-specific enhancer factor 2B
6c9l_B2e-18174173Myocyte-specific enhancer factor 2B
6c9l_C2e-18174173Myocyte-specific enhancer factor 2B
6c9l_D2e-18174173Myocyte-specific enhancer factor 2B
6c9l_E2e-18174173Myocyte-specific enhancer factor 2B
6c9l_F2e-18174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}.
UniprotTISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022016988.11e-169truncated transcription factor CAULIFLOWER A-like
SwissprotQ424293e-89AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A251RXF91e-167A0A251RXF9_HELAN; Putative transcription factor, MADS-box, Transcription factor, K-box
STRINGXP_009792071.11e-99(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-60AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]