PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002886
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NF-YC
Protein Properties Length: 234aa    MW: 25948 Da    PI: 9.4246
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48343925PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-33171PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC642.9e-206861898
      NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
               ++++P arikki++adedv +i+  +P l+ska elf+ +l  r++  + +   +tl+ + ++++v++ ++fdfl div +
  Han002886  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTLNSTHLKQCVQSFNVFDFLRDIVGK 86
               5789*************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.8E-27372IPR009072Histone-fold
SuperFamilySSF471131.62E-20488IPR009072Histone-fold
PfamPF008089.9E-20871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK  60
TLNSTHLKQC VQSFNVFDFL RDIVGKVPDL GGSDAAGEDR SAPKRRKVAD GDHNDGDEIE  120
DSKRDKRPEI LHANGSGRGR GRGRDRGRGR PSRADKEAYA AAAAAAYDKH ETNSSISDKP  180
KPNSTLDSLE DADSKENQNL AGVKAEDTVK VRNFDPHLRS GREMETHPVF RQSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-24272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139149RGRGRDRGRGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022029984.11e-131dr1-associated corepressor-like
TrEMBLA0A251VBA61e-130A0A251VBA6_HELAN; Putative histone superfamily protein
STRINGGLYMA14G04321.15e-67(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.18e-60NF-YC family protein