PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002889
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NAC
Protein Properties Length: 233aa    MW: 25674.4 Da    PI: 9.7017
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18711366PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-31036PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.91.2e-1624982128
        NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                yWkatg+dk+vl++ ++++vg+kk  vfy g+ pkg+kt+W+mheyrl
  Han002889   2 YWKATGTDKPVLTSgGTQKVGVKKAPVFYGGKPPKGSKTNWIMHEYRL 49 
                9***********9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.807183IPR003441NAC domain
PfamPF023651.3E-6249IPR003441NAC domain
SuperFamilySSF1019411.14E-20283IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
XYWKATGTDK PVLTSGGTQK VGVKKAPVFY GGKPPKGSKT NWIMHEYRLA DSKTISKPPG  60
CNPVNKKASL RLDDWVLCRI YKKHNIQRPV DSDSNDHAMT GMLASIPPSI SLRPTGFNTM  120
LENHEHSVVF DAMLTSNLNS TENVNITTSN LLPVKRSLPN FFWNDEGHTS NSPYTKRFIS  180
DSNSDGGVLV TRTNEEXNGG SIANLLGQQQ ALLGSVGDAG VYRQPYQLPS MNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-2528597167NO APICAL MERISTEM PROTEIN
1ut4_B6e-2528597167NO APICAL MERISTEM PROTEIN
1ut7_A6e-2528597167NO APICAL MERISTEM PROTEIN
1ut7_B6e-2528597167NO APICAL MERISTEM PROTEIN
3swm_A6e-25285100170NAC domain-containing protein 19
3swm_B6e-25285100170NAC domain-containing protein 19
3swm_C6e-25285100170NAC domain-containing protein 19
3swm_D6e-25285100170NAC domain-containing protein 19
3swp_A6e-25285100170NAC domain-containing protein 19
3swp_B6e-25285100170NAC domain-containing protein 19
3swp_C6e-25285100170NAC domain-containing protein 19
3swp_D6e-25285100170NAC domain-containing protein 19
4dul_A6e-2528597167NAC domain-containing protein 19
4dul_B6e-2528597167NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022039226.11e-166NAC transcription factor 56-like
TrEMBLA0A251UU141e-165A0A251UU14_HELAN; Putative NAC domain-containing protein
STRINGGorai.002G073800.14e-78(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-48NAC domain containing protein 2