PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002913
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NF-YA
Protein Properties Length: 232aa    MW: 25804.5 Da    PI: 7.2522
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32088970PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-26905PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.2e-32119175158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hAlrR Rg+gGrF
  Han002913 119 QEPVYVNAKQYHAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHALRRVRGTGGRF 175
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.4E-36117178IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.713118178IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.4E-27120175IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-24121143IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860123143IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-24152175IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRANSSDSSP PEQSLDRESQ SDEVLSEEED DASKETQNAS SFRSDKNYQQ QGVPNILPNN  60
GETVGQVPQL ELVGHTIACA PNPYCDPYYG GMMAAYCQPF VHPQFLEQAR MPLPLEMAQE  120
PVYVNAKQYH AILRRRQSRA KAELEKKLIK DRKPYLHESR HQHALRRVRG TGGRFAKKTD  180
VNKNTTGSGS GSAMSSSQSV NSNRVHSESA ESLDTPRGGL VNSLNTHTYL DN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20119175258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022005860.11e-173nuclear transcription factor Y subunit A-9-like
RefseqXP_022005861.11e-173nuclear transcription factor Y subunit A-9-like
SwissprotQ9LXV57e-56NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A251SJV11e-171A0A251SJV1_HELAN; Putative nuclear transcription factor Y subunit A
STRINGSolyc11g065700.1.12e-74(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-56nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]