PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003144
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 217aa    MW: 24801.9 Da    PI: 9.7082
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18715354PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-33007PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.1e-1864118256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq   Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Han003144  64 RKKLRLSKEQSAYLEETFKEHNTLNPKQKLALAEQLHLRPRQVEVWFQNRRARTK 118
                788899***********************************************98 PP
2HD-ZIP_I/II125.81.9e-4064154192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq++ LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +lk
    Han003144  64 RKKLRLSKEQSAYLEETFKEHNTLNPKQKLALAEQLHLRPRQVEVWFQNRRARTKLKQTEVDFEYLKRCCETLTDENRRLHKELQELR-ALK 154
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-1748114IPR009057Homeodomain-like
SuperFamilySSF466893.76E-1857121IPR009057Homeodomain-like
PROSITE profilePS5007116.5260120IPR001356Homeobox domain
SMARTSM003893.0E-1462124IPR001356Homeobox domain
CDDcd000862.39E-1464121No hitNo description
PfamPF000461.8E-1564118IPR001356Homeobox domain
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
SMARTSM003404.2E-23120163IPR003106Leucine zipper, homeobox-associated
PfamPF021835.0E-11120154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
XFEVKRMAVG TEEATSSFRL EFMSYGGRNG SENHKRGFEI GNDAVVVERA SSRASDEDEH  60
GLSRKKLRLS KEQSAYLEET FKEHNTLNPK QKLALAEQLH LRPRQVEVWF QNRRARTKLK  120
QTEVDFEYLK RCCETLTDEN RRLHKELQEL RALKTTSNPF YMQLPATTLT MCPSCERVAT  180
TVPPPSSATL TNPVGQNSMK ASTPLNPKPR PLMFPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268SRKKLRL
2112120RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021978888.11e-155homeobox-leucine zipper protein HOX11-like isoform X1
RefseqXP_021978891.11e-155homeobox-leucine zipper protein HOX11-like isoform X2
SwissprotP466651e-77HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A251VPA81e-154A0A251VPA8_HELAN; Putative leucine zipper, homeobox-associated, Homeodomain-like protein
STRINGXP_010265939.15e-86(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-80homeobox from Arabidopsis thaliana