PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003250
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24639.9 Da    PI: 6.6887
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32093280PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-28864PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-282474151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien+snrqvt+skR+ngi+KKA+E+ vLCda+v+++i++s+gk+yey+s
  Han003250 24 KRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCS 74
               79***********************************************96 PP
2K-box79.77.1e-2786176195
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                yq+ sg++l++ak+e+lq+e++++kke+e++q e+Rhl+Ged++sL+++eL   e++Le++l++iR+kK+e+     + ++k+e+ l+eenk L 
  Han003250  86 YQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEELIGYEDALENGLTNIREKKDEIP----KIMRKREQVLEEENKHLM 176
                7899******************************************************************985....679999999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-381675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.3571676IPR002100Transcription factor, MADS-box
CDDcd002653.28E-391795No hitNo description
SuperFamilySSF554552.62E-3617111IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-281838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003192.7E-222572IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-283853IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-285374IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1897176IPR002487Transcription factor, K-box
PROSITE profilePS5129714.91499185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
XLAGIVTEAI ERGEGMGRGK IEIKRIENTS NRQVTYSKRK NGIIKKAKEI TVLCDANVSL  60
VIYGSSGKMY EYCSPKTNLI DMLDRYQRLS GNKLWDAKHE NLQNEIDRIK KENESMQIEL  120
RHLKGEDITS LNYEELIGYE DALENGLTNI REKKDEIPKI MRKREQVLEE ENKHLMYLVQ  180
QSEMAAMGDY QQHEPFSFRV QPMQPNLHER M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-171690173MEF2 CHIMERA
6byy_B5e-171690173MEF2 CHIMERA
6byy_C5e-171690173MEF2 CHIMERA
6byy_D5e-171690173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in petals and stamens, less in carpels and sepals.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022019591.11e-143floral homeotic protein PMADS 2-like
SwissprotQ074742e-98MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A251VI851e-142A0A251VI85_HELAN; Putative floral homeotic protein PMADS 2
STRINGXP_009803901.11e-99(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]