PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003347
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 204aa    MW: 23853.9 Da    PI: 5.8511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32093236PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-39412PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.2e-1952105457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                ++++++eq+  Le+ F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Han003347  52 KRKLSDEQVSLLEQNFGDEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 105
                56899***********************************************95 PP
2HD-ZIP_I/II120.58.8e-3951142293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkr+ls+eqv+lLE++F  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +d+ + e++rLe+ev +L+e+l+e
    Han003347  51 KKRKLSDEQVSLLEQNFGDEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEQEYSKLKTDHDSTVLEKCRLETEVLKLKEQLSE 142
                  9****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.02246106IPR001356Homeobox domain
SuperFamilySSF466894.28E-1848115IPR009057Homeodomain-like
SMARTSM003891.8E-1949110IPR001356Homeobox domain
CDDcd000866.38E-1651107No hitNo description
PfamPF000468.4E-1752105IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-2153113IPR009057Homeodomain-like
PRINTSPR000318.0E-67786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000318.0E-686102IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKTQTQVDDQ LVLLSQYYPA IYDQLIPEQV EVVKPRRRRK KTKSESSTGF KKRKLSDEQV  60
SLLEQNFGDE HKLESERKDK LASELGLDPR QVAVWFQNRR ARWKNKKLEQ EYSKLKTDHD  120
STVLEKCRLE TEVLKLKEQL SEAEKEINRL AERVDGTSST SPSSSFSMEA MEPPFFEGFG  180
MEGLENVFCV QDNNYIHGFD WLNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13653RRRKKTKSESSTGFKKRK
23853RKKTKSESSTGFKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021993711.11e-128homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU702e-74ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A251TBB91e-126A0A251TBB9_HELAN; Putative homeobox protein 21
STRINGSolyc02g085630.2.13e-88(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-63homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]