PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003509
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB
Protein Properties Length: 190aa    MW: 22047.8 Da    PI: 10.0061
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48356185PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-54387PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l++++  +G g W+t ar  g++Rt+k+c++rw++yl
        Han003509 16 KGPWTMEEDLILINYISNHGEGVWNTLARSAGLKRTGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding55.81e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
        Han003509  69 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-23966IPR009057Homeodomain-like
PROSITE profilePS5129415.3911163IPR017930Myb domain
SuperFamilySSF466891.24E-3013110IPR009057Homeodomain-like
SMARTSM007172.2E-121565IPR001005SANT/Myb domain
PfamPF002497.8E-161663IPR001005SANT/Myb domain
CDDcd001679.43E-101863No hitNo description
PROSITE profilePS5129425.85964118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2567118IPR009057Homeodomain-like
SMARTSM007171.8E-1568116IPR001005SANT/Myb domain
PfamPF002491.4E-1669112IPR001005SANT/Myb domain
CDDcd001672.57E-1273112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKKSPSNSSQ DVEVRKGPWT MEEDLILINY ISNHGEGVWN TLARSAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQLLI MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ  120
AGSFSGQKSS KHTDQATTST TQTFNAINPM QTYSPPYDNF QNFSGPFPTE TNENMWSMED  180
LWSMQLLNSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251311824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022011519.11e-141myb-related protein 340-like
SwissprotP813914e-94MYB05_ANTMA; Myb-related protein 305
SwissprotP813964e-94MYB40_ANTMA; Myb-related protein 340
TrEMBLA0A251S7H51e-140A0A251S7H5_HELAN; Putative myb protein
STRINGXP_009618404.11e-101(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-82myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]