PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003553
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C2H2
Protein Properties Length: 184aa    MW: 20951.9 Da    PI: 10.1627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32076834PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-29222PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-065981123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Han003553 59 FVCEICNKGFQRDQNLQLHRRGH 81
               89*******************88 PP
2zf-C2H214.79.2e-05135157123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC  C+k +  +s+ k H++ +
  Han003553 135 WKCDQCSKKYAVQSDWKAHLKIC 157
                58******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.67E-95881No hitNo description
Gene3DG3DSA:3.30.160.604.4E-65881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.2E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035593100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-6123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.67E-9130155No hitNo description
SMARTSM0035580135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTADESAVSG EASGSSPGNQ LAILPEKPVK RKRNLAGMPD PDAEVIALSP KTLMATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TGNEIRKRVY VCPEPSCVHH DPKRALGDLT  120
GIKKHFSRKH GEKKWKCDQC SKKYAVQSDW KAHLKICGTR EYRCDCGTLF SRRDSFITHR  180
AFCX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-30131183355Zinc finger protein JACKDAW
5b3h_F3e-30131183355Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021972695.11e-137protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-108IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A251UA281e-135A0A251UA28_HELAN; Putative zinc finger, C2H2-like, Zinc finger, double-stranded RNA binding protein
STRINGVIT_18s0001g12220.t011e-112(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]