PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003587
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 180aa    MW: 21321.4 Da    PI: 10.0531
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32086860PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-37479PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.8e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri++k  rqv+f+kRrng++KKA+ELSvLCd++ av +fs ++klye+s+
  Han003587  9 KRIQDKVSRQVSFTKRRNGLMKKAHELSVLCDVDLAVFVFSGRNKLYEFST 59
               79***********************************************96 PP
2K-box24.61.1e-0980169998
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +  +  e+l+ ++++++   e  + +q hl   ++++ ++ eL qLe+q+e  l+++R+ K++l+l  +++lq+ +k+l+++++ ++ k+
  Han003587  80 VRRTVREELTLQYRNVRTADELTEMTQWHLNEHKVQQADVSELFQLEKQIEANLQQVRTIKTKLMLGVVKNLQEEQKQLRQDKRLMEGKV 169
                6667778888899999999888889999*****************************************************999877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.632161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-34160IPR002100Transcription factor, MADS-box
CDDcd002652.51E-36278No hitNo description
SuperFamilySSF554551.7E-29287IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.13285175IPR002487Transcription factor, K-box
PfamPF014868.3E-786169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRGKVELKR IQDKVSRQVS FTKRRNGLMK KAHELSVLCD VDLAVFVFSG RNKLYEFSTG  60
DSMPDILKRY EDHKHADEAV RRTVREELTL QYRNVRTADE LTEMTQWHLN EHKVQQADVS  120
ELFQLEKQIE ANLQQVRTIK TKLMLGVVKN LQEEQKQLRQ DKRLMEGKVA NELRIWERNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-21184183MEF2 CHIMERA
6bz1_B2e-21184183MEF2 CHIMERA
6bz1_C2e-21184183MEF2 CHIMERA
6bz1_D2e-21184183MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022026011.11e-128truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A251RPX11e-127A0A251RPX1_HELAN; Putative AGAMOUS-like 31
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.23e-44AGAMOUS-like 31