PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003591
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 180aa    MW: 21182.1 Da    PI: 6.8072
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32092762PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-10629PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.28e-202273556
               SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               ++f++eq++ Le++F++++++  +++ e+A++lgL  rqV +WFqNrRa++k
  Han003591 22 RRFSDEQIKSLESVFKRENKLEPRKKVEMARELGLHPRQVAIWFQNRRARWK 73
               48*************************************************9 PP
2HD-ZIP_I/II123.11.3e-3921111393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   rr+s+eq+k+LE+ F++e+kLep++Kve+areLgl+prqva+WFqnrRAR+k+kq+E+dy  Lk+ yd+l+++ e+L+ke+++L +++++
    Han003591  21 SRRFSDEQIKSLESVFKRENKLEPRKKVEMARELGLHPRQVAIWFQNRRARWKSKQVEQDYYNLKADYDTLAHRFESLKKEKHALLHQVSQ 111
                  59***********************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-181476IPR009057Homeodomain-like
PROSITE profilePS5007117.071575IPR001356Homeobox domain
SMARTSM003891.5E-171879IPR001356Homeobox domain
CDDcd000862.21E-142276No hitNo description
Gene3DG3DSA:1.10.10.602.7E-202281IPR009057Homeodomain-like
PfamPF000464.6E-172273IPR001356Homeobox domain
PRINTSPR000314.3E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000314.3E-65571IPR000047Helix-turn-helix motif
PfamPF021837.0E-1375115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
XRNSSSSIER KKSKKHNNSS SRRFSDEQIK SLESVFKREN KLEPRKKVEM ARELGLHPRQ  60
VAIWFQNRRA RWKSKQVEQD YYNLKADYDT LAHRFESLKK EKHALLHQVS QLKELDSGSE  120
NGGELKNGNS SSGPLEYMQG DKLVSEEEEE EEEERHENLD MASLFDQSCS NWWDIWSSNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKSKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022033938.11e-127homeobox-leucine zipper protein ATHB-12-like
SwissprotP468973e-41ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A251UVV41e-125A0A251UVV4_HELAN; Putative homeobox 12
STRINGGLYMA16G02390.15e-46(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-39homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]