PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003669
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 170aa    MW: 20046 Da    PI: 9.5336
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48331723PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-57914PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.9e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++ klye++s
  Han003669  9 KRIENKINRQVTFTKRRNGLLKKAYELSVLCDAEVALIIFSNREKLYEFCS 59
               79***********************************************96 PP
2K-box75.71.3e-2578158484
      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                 + ++ ++  ++s+++e+ kLk+++e+Lq+ qR+l GedL++L+lkeL+qLe+qL++ l++iRs +++ +l+ ++elq ke
  Han003669  78 MEVNRSANDAEQSSYKEYIKLKAKYESLQQYQRQLFGEDLNPLNLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVKE 158
                555667777899******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.87161IPR002100Transcription factor, MADS-box
CDDcd002657.71E-42277No hitNo description
SuperFamilySSF554553.14E-34280IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-32323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2184158IPR002487Transcription factor, K-box
PROSITE profilePS5129712.93888170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FTKRRNGLLK KAYELSVLCD AEVALIIFSN REKLYEFCST  60
SNMIKMLERY QNCTYSSMEV NRSANDAEQS SYKEYIKLKA KYESLQQYQR QLFGEDLNPL  120
NLKELEQLER QLDSTLRQIR SIRTQSMLDR LSELQVKEGC GLKLQSLQNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-2475158187Developmental protein SEPALLATA 3
4ox0_B2e-2475158187Developmental protein SEPALLATA 3
4ox0_C2e-2475158187Developmental protein SEPALLATA 3
4ox0_D2e-2475158187Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022012783.11e-108MADS-box protein CMB1-like
SwissprotQ8LLR21e-82MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A251SB601e-106A0A251SB60_HELAN; Putative transcription factor, MADS-box, Transcription factor, K-box
STRINGGLYMA18G50900.11e-83(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]