PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han003676

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

HD-ZIP

Protein Properties

Length: 169aa MW: 19631 Da PI: 9.9372

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48352750	PU_ref	Unigene	View CDS
PUT-169a-Helianthus_annuus-24363	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.8e-18	13	68	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ ++t+eq++ Le+ F+ n++++ +++ +LA++lg++ rq+ +W+qN+Ra++++ Han003676 13 STKKRLTNEQVKLLETSFNYNNKLDSTRKSHLAQELGIPARQIAIWYQNKRARWRN 68 577889************************************************95 PP
2	HD-ZIP_I/II	104.8	6.9e-34	14	105	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl++eqvklLE+sF+ ++kL+++rK++la+eLg+ +rq+a+W+qn+RAR++++ lE++y+a+++++++++++++rLe+eve+L+ el++ Han003676 14 TKKRLTNEQVKLLETSFNYNNKLDSTRKSHLAQELGIPARQIAIWYQNKRARWRNQSLETEYKAIQHKLERVSSDKSRLEREVERLKGELEK 105 59*************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-18	5	70	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.455	9	69	IPR001356	Homeobox domain
SMART	SM00389	2.1E-16	11	73	IPR001356	Homeobox domain
CDD	cd00086	7.85E-14	12	70	No hit	No description
Pfam	PF00046	1.3E-15	13	68	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.7E-19	16	76	IPR009057	Homeodomain-like
PRINTS	PR00031	4.4E-5	40	49	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	44	67	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.4E-5	49	65	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MNISQPKKHP QKSTKKRLTN EQVKLLETSF NYNNKLDSTR KSHLAQELGI PARQIAIWYQ 60 NKRARWRNQS LETEYKAIQH KLERVSSDKS RLEREVERLK GELEKAKELL VSSKTQMNYA 120 SLPSFSSSCD EVGSSSLLGD HGDFYVCFDN HHQFDHKSNG HDFFGRSMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	16	KKHPQKSTKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022022503.1	1e-124	homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A2J6JM97	1e-105	A0A2J6JM97_LACSA; Uncharacterized protein
STRING	VIT_10s0003g00380.t01	1e-56	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-25	homeobox protein 40