PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003719
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NF-YB
Protein Properties Length: 161aa    MW: 17904.9 Da    PI: 4.4568
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32090398PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-56159PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB445.4e-1416113596
      NF-YB   5 drflPianvsrimkkvlPa...na...kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                 ++lP a v r++k  l +   n+   ++ kd+     e +  fi ++++ a+d c++ kr+tin++d++ al ++ f ++++pl++ l+++++ +++
  Han003719  16 AEELPKAIVRRVVKDKLSQlsqNGadiQVLKDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIAPLRASLEEFKQKNAK 113
                5789**********987641113322256788888899*****************************************************9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.8E-3314151IPR009072Histone-fold
PfamPF008081.2E-91888IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.3E-2519142IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEPPTPTVVE KVVAEAEELP KAIVRRVVKD KLSQLSQNGA DIQVLKDSLL AFSESARIFI  60
HYLSATANDI CKESKRQTIN AEDVFKALEE IEFPEFIAPL RASLEEFKQK NAKRKSDSSK  120
AKEAKKSKTE EEPVTENGES LENGESHENG DEDGNTVADE E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022009412.11e-96DNA polymerase epsilon subunit 3
TrEMBLA0A251SFY93e-95A0A251SFY9_HELAN; Putative histone-fold protein
STRINGXP_010245113.13e-59(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-36nuclear factor Y, subunit B11