PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003848
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 137aa    MW: 15863 Da    PI: 5.3046
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48338902PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-7361965PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1973126356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t +q++ Le  Fe+++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k
  Han003848  73 KKRRLTGDQVRFLEXSFESDNKLEPERKIQLAKELGLQPRQVAIWFQNRRARLK 126
                56789***********************************************98 PP
2HD-ZIP_I/II1062.9e-3472135164
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64 
                  ekkrrl+ +qv++LE sFe+++kLeperK +la+eLglqprqva+WFqnrRAR k kqlEkdy+
    Han003848  72 EKKRRLTGDQVRFLEXSFESDNKLEPERKIQLAKELGLQPRQVAIWFQNRRARLKDKQLEKDYD 135
                  69*************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-2058130IPR009057Homeodomain-like
PROSITE profilePS5007117.42768128IPR001356Homeobox domain
SMARTSM003895.5E-1971132IPR001356Homeobox domain
CDDcd000861.68E-1673126No hitNo description
PfamPF000466.4E-1773126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-2074135IPR009057Homeodomain-like
PRINTSPR000312.0E-699108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000312.0E-6108124IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAARSFLFGG SVMLTNKRVH SSSAADPSFV PRSSAFQGML SFEDQGNGSG GQFWQNEDNG  60
DDEYDEYFHQ PEKKRRLTGD QVRFLEXSFE SDNKLEPERK IQLAKELGLQ PRQVAIWFQN  120
RRARLKDKQL EKDYDDX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARLKDKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.2000.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022019366.12e-93homeobox-leucine zipper protein HAT5-like
TrEMBLA0A251VG295e-92A0A251VG29_HELAN; Putative leucine zipper, homeobox-associated, Homeodomain-like, DNA repair protein XRCC4
STRINGGorai.001G073600.11e-46(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-32homeobox 1