PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003945
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family GRAS
Protein Properties Length: 107aa    MW: 12644.5 Da    PI: 9.6106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32090325PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-39509PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS87.91.6e-272105271374
       GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                ++a++ re+ er+ +E+ + gre++nv+aceg er+er et+++W+ r  +aGF+++pl+ ++ k ak  ++ ++ + + ++e+ ++l++gWk+r ++++
  Han003945   2 IDANATRETPERTLIEKNFWGREAMNVIACEGGERIERPETYKQWQVRNLRAGFRQLPLNRDILKLAKERVKSCYHKDFGIDEDGHWLLQGWKGRIIYAL 101
                6899999********************************************************************889********************** PP

       GRAS 371 SaWr 374
                S+W+
  Han003945 102 SSWK 105
                ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.175185IPR005202Transcription factor GRAS
PfamPF035145.7E-252105IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MIDANATRET PERTLIEKNF WGREAMNVIA CEGGERIERP ETYKQWQVRN LRAGFRQLPL  60
NRDILKLAKE RVKSCYHKDF GIDEDGHWLL QGWKGRIIYA LSSWKPV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022018328.19e-76scarecrow-like protein 30
RefseqXP_022018329.19e-76scarecrow-like protein 30
SwissprotP0C8836e-42SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A251S0383e-74A0A251S038_HELAN; Putative transcription factor GRAS
STRINGXP_006486464.11e-53(Citrus sinensis)
STRINGXP_006435553.11e-53(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.12e-44GRAS family protein