PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han004184

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

GRAS

Protein Properties

Length: 403aa MW: 44415 Da PI: 5.3531

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32077756	PU_unref	Unigene	View CDS
PUT-169a-Helianthus_annuus-61377	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	32.4	1.2e-10	320	400	3	86
GRAS 3 elLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 ++L+++Ae sg+++ aq +Larl+++ ++p+ +p+qR+a+yf+eAL+ + ++s l + + + n ++ a+k++se Han004184 320 DQLFAAAELTLSGNFSHAQGILARLNHQfaSAPAPtKPFQRAAFYFKEALQMQSQSS---LNQNRVAPP---FNGFVQMGAYKMLSE 400 79***********************9954555569************988873...332222222...235555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.2E-8	320	400	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MIGMAFEVAT FQQSLKEPNK LKEASYGSNN NSNSNEPISV LDTRRSPSPS TSTSTHSSSF 60 NGGATTTPPP PPVSDQDNPQ QKWPESVPQE KGFSGYDPNF PATADGGRKD EWPELQPIPA 120 DFELQQQRFG VSLEDWESLL SEPTASQAQD QSLRWISGDF DDSSLSLQQL LQSNPNDQNA 180 PVSNVSETTQ LPLSFNQQNP NLFPFSNSDQ NPPVVFNNPP PPPQIHLQKS PVFNHALHKV 240 PVFQQNLQKV PVSNLGHEKD PVSNMGLQKV VILNQGLQKV VLNQGYELVD KKPLMVAGTK 300 QETGPNSPQN HHQQYQLICD QLFAAAELTL SGNFSHAQGI LARLNHQFAS APAPTKPFQR 360 AAFYFKEALQ MQSQSSLNQN RVAPPFNGFV QMGAYKMLSE VSX

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MIGMAFEVAT FQQSLKEPNK LKEASYGSNN NSNSNEPISV LDTRRSPSPS TSTSTHSSSF  60
NGGATTTPPP PPVSDQDNPQ QKWPESVPQE KGFSGYDPNF PATADGGRKD EWPELQPIPA  120
DFELQQQRFG VSLEDWESLL SEPTASQAQD QSLRWISGDF DDSSLSLQQL LQSNPNDQNA  180
PVSNVSETTQ LPLSFNQQNP NLFPFSNSDQ NPPVVFNNPP PPPQIHLQKS PVFNHALHKV  240
PVFQQNLQKV PVSNLGHEKD PVSNMGLQKV VILNQGLQKV VLNQGYELVD KKPLMVAGTK  300
QETGPNSPQN HHQQYQLICD QLFAAAELTL SGNFSHAQGI LARLNHQFAS APAPTKPFQR  360
AAFYFKEALQ MQSQSSLNQN RVAPPFNGFV QMGAYKMLSE VSX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022000427.1	0.0	scarecrow-like protein 6
TrEMBL	A0A251SRE6	0.0	A0A251SRE6_HELAN; Putative transcription factor GRAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	7e-09	GRAS family protein